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About LRI
Mr DENISE Alain
DENISE Professeur classe exceptionnelle
Université Paris-Saclay
Bioinformatics

Tel : (+33 1691)56369
Fax : (+33 1691)56586
Office : 167/PCRI-S

Personal web page : http://www.lri.fr/~denise/
Email : Alain.Denise@lri.fr

Research activities
   - Combinatorics
   - System Biology
   - Structural biology

Publications




Leadership positions
   - Laboratory council member
   - Research group Head
   - Member of the hiring committee
   - Scientific council member
   - Director of the STIC Doctoral Shool of Paris-Saclay University


Highlights
   - Average complexity of the Jiang-Wang-Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm
   - VARNA software distinguished
   - Automated prediction of three-way junction topological families in RNA secondary structures
   - Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots
   - A new dichotomic algorithm for the uniform random generation of words in regular languages

Software & Patents
   - GenRGenS: Generation of Random Genomic Sequences and Structures
   - VARNA: Visualisation Applet for RNA
   - NestedAlign: Pairwise RNA secondary structure comparison
   - Rna3Dmotif: Software for extracting RNA tertiary motifs
   - Cartaj: Classification Of RNA threeway Junctions
   - ConQuR-Bio: ConQuR-Bio
   - LiCoRNA: aLignment of Complex RNAs
   - GARN: Game Algorithms for RNa 3D sampling
   - CaRNAval: Database of RNA Recurrent Interaction Networks
   - Orphea: Pseudo-knot RNA sequence finder


Ph.D. dissertations & Faculty habilitations
Faculty habilitation   - Random structures, models, and genome analysis